J5_1YI2_006

3D structure

PDB id

1YI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Erythromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

1YI2|1|0|G|1814, 1YI2|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1YI2_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0267

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

1YI2|1|0|G|1752
1YI2|1|0|C|1753
1YI2|1|0|A|1754
1YI2|1|0|A|1755
1YI2|1|0|G|1756
1YI2|1|0|U|1757
1YI2|1|0|U|1758
1YI2|1|0|A|1759
1YI2|1|0|G|1760
*
1YI2|1|0|U|1784
1YI2|1|0|G|1785
*
1YI2|1|0|U|1807
1YI2|1|0|C|1808
*
1YI2|1|0|G|1812
1YI2|1|0|U|1813
1YI2|1|0|G|1814
1YI2|1|0|A|1815
1YI2|1|0|C|1816
1YI2|1|0|U|1817
1YI2|1|0|C|1818
1YI2|1|0|G|1819
1YI2|1|0|G|1820
*
1YI2|1|0|C|2029
1YI2|1|0|A|2030
1YI2|1|0|C|2031

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19E