J5_1YIT_008
3D structure
- PDB id
- 1YIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 1YIT|1|0|U|2117, 1YIT|1|0|A|2465, 1YIT|1|0|G|2466, 1YIT|1|0|A|2467, 1YIT|1|0|A|2468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1YIT_008 not in the Motif Atlas
- Homologous match to J5_4V9F_008
- Geometric discrepancy: 0.0254
- The information below is about J5_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
1YIT|1|0|U|2115
1YIT|1|0|U|2116
1YIT|1|0|U|2117
1YIT|1|0|A|2118
*
1YIT|1|0|U|2276
1YIT|1|0|U|2277
1YIT|1|0|U|2278
1YIT|1|0|G|2279
*
1YIT|1|0|C|2292
1YIT|1|0|G|2293
*
1YIT|1|0|C|2315
1YIT|1|0|G|2316
*
1YIT|1|0|C|2464
1YIT|1|0|A|2465
1YIT|1|0|G|2466
1YIT|1|0|A|2467
1YIT|1|0|A|2468
1YIT|1|0|A|2469
1YIT|1|0|A|2470
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 3
- 50S RIBOSOMAL PROTEIN L44E
- Chain A
- 50S RIBOSOMAL PROTEIN L2P
- Chain L
- 50S RIBOSOMAL PROTEIN L15P
- Chain M
- 50S RIBOSOMAL PROTEIN L15E
Coloring options: