J5_1YJN_007

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAAGACC*GGAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG

Length

38 nucleotides

Bulged bases

1YJN|1|0|A|2483, 1YJN|1|0|C|2644, 1YJN|1|0|U|2645

QA status

Modified nucleotides: UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YJN|1|0|C|2098
1YJN|1|0|A|2099
1YJN|1|0|A|2100
1YJN|1|0|A|2101
1YJN|1|0|G|2102
1YJN|1|0|A|2103
1YJN|1|0|C|2104
1YJN|1|0|C|2105
*
1YJN|1|0|G|2481
1YJN|1|0|G|2482
1YJN|1|0|A|2483
1YJN|1|0|U|2484
1YJN|1|0|A|2485
1YJN|1|0|A|2486
1YJN|1|0|C|2487
1YJN|1|0|A|2488
1YJN|1|0|G|2489
*
1YJN|1|0|C|2533
1YJN|1|0|C|2534
1YJN|1|0|U|2535
1YJN|1|0|C|2536
1YJN|1|0|G|2537
1YJN|1|0|A|2538
1YJN|1|0|U|2539
1YJN|1|0|G|2540
1YJN|1|0|U|2541
*
1YJN|1|0|G|2618
1YJN|1|0|UR3|2619
1YJN|1|0|U|2620
1YJN|1|0|PSU|2621
1YJN|1|0|A|2622
1YJN|1|0|G|2623
*
1YJN|1|0|C|2641
1YJN|1|0|G|2642
1YJN|1|0|G|2643
1YJN|1|0|C|2644
1YJN|1|0|U|2645
1YJN|1|0|G|2646

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain B

50S ribosomal protein L3P

Chain C

50S ribosomal protein L4E

Chain L

50S ribosomal protein L15P

Chain R

50S ribosomal protein L22P