J5_1Z58_002

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGGAUG

Length

23 nucleotides

Bulged bases

1Z58|1|2|U|824, 1Z58|1|2|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1Z58_002 not in the Motif Atlas

Homologous match to J5_7A0S_004

Geometric discrepancy: 0.256

The information below is about J5_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.6

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

1Z58|1|2|C|593
1Z58|1|2|G|594
1Z58|1|2|A|595
1Z58|1|2|C|596
1Z58|1|2|U|597
1Z58|1|2|U|598
*
1Z58|1|2|A|681
1Z58|1|2|G|682
1Z58|1|2|A|683
1Z58|1|2|C|684
*
1Z58|1|2|G|822
1Z58|1|2|U|823
1Z58|1|2|U|824
1Z58|1|2|C|825
*
1Z58|1|2|G|1209
1Z58|1|2|C|1210
*
1Z58|1|2|G|1263
1Z58|1|2|C|1264
1Z58|1|2|G|1265
1Z58|1|2|G|1266
1Z58|1|2|A|1267
1Z58|1|2|U|1268
1Z58|1|2|G|1269

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains