J5_1Z58_005

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AUG

Length

22 nucleotides

Bulged bases

1Z58|1|2|U|49, 1Z58|1|2|G|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1Z58_005 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.2681

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1Z58|1|2|C|46
1Z58|1|2|G|47
1Z58|1|2|A|48
1Z58|1|2|U|49
1Z58|1|2|G|50
1Z58|1|2|A|51
1Z58|1|2|A|52
1Z58|1|2|G|53
*
1Z58|1|2|C|114
1Z58|1|2|G|115
1Z58|1|2|A|116
1Z58|1|2|A|117
1Z58|1|2|U|118
1Z58|1|2|G|119
*
1Z58|1|2|C|128
1Z58|1|2|A|129
*
1Z58|1|2|U|142
1Z58|1|2|A|143
1Z58|1|2|U|144
*
1Z58|1|2|A|153
1Z58|1|2|U|154
1Z58|1|2|G|155

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains