J5_1Z58_007

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

ACGAAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCUCUAU

Length

42 nucleotides

Bulged bases

1Z58|1|2|C|2038, 1Z58|1|2|A|2045, 1Z58|1|2|A|2427, 1Z58|1|2|U|2428, 1Z58|1|2|G|2484, 1Z58|1|2|U|2588, 1Z58|1|2|C|2589, 1Z58|1|2|A|2593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Z58|1|2|A|2037
1Z58|1|2|C|2038
1Z58|1|2|G|2039
1Z58|1|2|A|2040
1Z58|1|2|A|2041
1Z58|1|2|A|2042
1Z58|1|2|A|2043
1Z58|1|2|G|2044
1Z58|1|2|A|2045
1Z58|1|2|C|2046
1Z58|1|2|C|2047
*
1Z58|1|2|G|2425
1Z58|1|2|G|2426
1Z58|1|2|A|2427
1Z58|1|2|U|2428
1Z58|1|2|A|2429
1Z58|1|2|A|2430
1Z58|1|2|C|2431
1Z58|1|2|A|2432
*
1Z58|1|2|U|2479
1Z58|1|2|C|2480
1Z58|1|2|G|2481
1Z58|1|2|A|2482
1Z58|1|2|U|2483
1Z58|1|2|G|2484
1Z58|1|2|U|2485
*
1Z58|1|2|G|2562
1Z58|1|2|U|2563
1Z58|1|2|U|2564
1Z58|1|2|C|2565
1Z58|1|2|A|2566
1Z58|1|2|G|2567
*
1Z58|1|2|C|2585
1Z58|1|2|G|2586
1Z58|1|2|G|2587
1Z58|1|2|U|2588
1Z58|1|2|C|2589
1Z58|1|2|U|2590
1Z58|1|2|C|2591
1Z58|1|2|U|2592
1Z58|1|2|A|2593
1Z58|1|2|U|2594

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains