J5_23WI_001
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GC*GCGAAUG*CGACUU*AGAC*GUUC
- Length
- 23 nucleotides
- Bulged bases
- 23WI|1|5|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_23WI_001 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.0804
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
23WI|1|5|G|1195
23WI|1|5|C|1196
*
23WI|1|5|G|1250
23WI|1|5|C|1251
23WI|1|5|G|1252
23WI|1|5|A|1253
23WI|1|5|A|1254
23WI|1|5|U|1255
23WI|1|5|G|1256
*
23WI|1|A|C|584
23WI|1|A|G|585
23WI|1|A|A|586
23WI|1|A|C|587
23WI|1|A|U|588
23WI|1|A|U|589
*
23WI|1|A|A|668
23WI|1|A|G|669
23WI|1|A|A|670
23WI|1|A|C|671
*
23WI|1|A|G|809
23WI|1|A|U|810
23WI|1|A|U|811
23WI|1|A|C|812
Current chains
- Chain 5
- RNA (2014-MER)
- Chain A
- 16S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain L
- Large ribosomal subunit protein uL15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
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