Loop J5_23WI

3D structure

PDB id: 23WI (explore in PDB, NAKB, or RNA 3D Hub)
Description: Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

Loop

Sequence: GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
Length: 37 nucleotides
Bulged bases: 23WI|1|5|A|2062, 23WI|1|5|A|2448, 23WI|1|5|U|2506, 23WI|1|5|U|2609
QA status: Modified nucleotides: H2U, 2MA, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

23WI|1|5|G|2057
23WI|1|5|A|2058
23WI|1|5|A|2059
23WI|1|5|A|2060
23WI|1|5|G|2061
23WI|1|5|A|2062
23WI|1|5|C|2063
23WI|1|5|C|2064
*
23WI|1|5|G|2446
23WI|1|5|G|2447
23WI|1|5|A|2448
23WI|1|5|H2U|2449
23WI|1|5|A|2450
23WI|1|5|A|2451
23WI|1|5|C|2452
23WI|1|5|A|2453
*
23WI|1|5|U|2500
23WI|1|5|C|2501
23WI|1|5|G|2502
23WI|1|5|2MA|2503
23WI|1|5|PSU|2504
23WI|1|5|G|2505
23WI|1|5|U|2506
23WI|1|5|C|2507
*
23WI|1|5|G|2582
23WI|1|5|G|2583
23WI|1|5|U|2584
23WI|1|5|U|2585
23WI|1|5|U|2586
23WI|1|5|A|2587
23WI|1|5|G|2588
*
23WI|1|5|C|2606
23WI|1|5|G|2607
23WI|1|5|G|2608
23WI|1|5|U|2609
23WI|1|5|C|2610
23WI|1|5|C|2611

Current chains

Chain 5: RNA (2014-MER)

Nearby chains

Chain 0: Large ribosomal subunit protein bL32
Chain A: Small subunit ribosomal RNA; SSU rRNA
Chain C: Large ribosomal subunit protein uL2
Chain D: Large ribosomal subunit protein uL3
Chain E: 50S ribosomal protein L4
Chain L: Large ribosomal subunit protein uL15
Chain M: 50S ribosomal protein L16
Chain S: 50S ribosomal protein L22

J5_23WI_004