J5_23WI_007

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

23WI|1|a|C|36
23WI|1|a|U|37
23WI|1|a|G|38
23WI|1|a|G|39
*
23WI|1|a|C|403
23WI|1|a|G|404
23WI|1|a|U|405
23WI|1|a|G|406
*
23WI|1|a|C|436
23WI|1|a|U|437
23WI|1|a|U|438
23WI|1|a|U|439
23WI|1|a|C|440
*
23WI|1|a|G|497
23WI|1|a|A|498
23WI|1|a|A|499
23WI|1|a|G|500
*
23WI|1|a|C|545
23WI|1|a|A|546
23WI|1|a|A|547
23WI|1|a|G|548

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain l

Small ribosomal subunit protein uS12