J5_28LN_001

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUG(PSU)C(PSU)*AAAAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

30 nucleotides

Bulged bases

28LN|1|A2|C|593

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|C|30
28LN|1|A2|U|31
28LN|1|A2|U|32
28LN|1|A2|G|33
28LN|1|A2|PSU|34
28LN|1|A2|C|35
28LN|1|A2|PSU|36
*
28LN|1|A2|A|519
28LN|1|A2|A|520
28LN|1|A2|A|521
28LN|1|A2|A|522
28LN|1|A2|A|523
28LN|1|A2|U|524
28LN|1|A2|A|525
28LN|1|A2|A|526
28LN|1|A2|C|527
*
28LN|1|A2|G|558
28LN|1|A2|G|559
28LN|1|A2|A|560
28LN|1|A2|A|561
28LN|1|A2|U|562
28LN|1|A2|G|563
*
28LN|1|A2|C|592
28LN|1|A2|C|593
28LN|1|A2|A|594
28LN|1|A2|U|595
*
28LN|1|A2|A|641
28LN|1|A2|U|642
28LN|1|A2|A|643
28LN|1|A2|OMG|644

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AJ

40S ribosomal protein S9

Chain AX

Small ribosomal subunit protein uS12

Chain Ae

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein