J5_28LN_003

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUG*CGAA(PSU)GGC*GA(OMG)*CACAU*(A2M)AGGCAG

Length

27 nucleotides

Bulged bases

28LN|1|A2|A|92, 28LN|1|A2|C|472

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|C|53
28LN|1|A2|A|54
28LN|1|A2|U|55
28LN|1|A2|G|56
*
28LN|1|A2|C|89
28LN|1|A2|G|90
28LN|1|A2|A|91
28LN|1|A2|A|92
28LN|1|A2|PSU|93
28LN|1|A2|G|94
28LN|1|A2|G|95
28LN|1|A2|C|96
*
28LN|1|A2|G|434
28LN|1|A2|A|435
28LN|1|A2|OMG|436
*
28LN|1|A2|C|457
28LN|1|A2|A|458
28LN|1|A2|C|459
28LN|1|A2|A|460
28LN|1|A2|U|461
*
28LN|1|A2|A2M|468
28LN|1|A2|A|469
28LN|1|A2|G|470
28LN|1|A2|G|471
28LN|1|A2|C|472
28LN|1|A2|A|473
28LN|1|A2|G|474

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4, X isoform

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8

Chain AJ

40S ribosomal protein S9

Chain AY

40S ribosomal protein S24