J5_28LN_004

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

28LN|1|A2|G|126, 28LN|1|A2|C|127

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|G|123
28LN|1|A2|U|124
28LN|1|A2|C|125
28LN|1|A2|G|126
28LN|1|A2|C|127
28LN|1|A2|U|128
28LN|1|A2|C|129
*
28LN|1|A2|G|183
28LN|1|A2|G|184
28LN|1|A2|G|185
*
28LN|1|A2|U|214
28LN|1|A2|G|215
*
28LN|1|A2|C|310
28LN|1|A2|C|311
28LN|1|A2|G|312
*
28LN|1|A2|C|337
28LN|1|A2|G|338
28LN|1|A2|A|339
28LN|1|A2|C|340
28LN|1|A2|C|341

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4, X isoform

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8