J5_28LN_005
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UG*CGAUGAAG*CGAACG*CG*UA
- Length
- 20 nucleotides
- Bulged bases
- 28LN|1|B8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28LN|1|B5|U|20
28LN|1|B5|G|21
*
28LN|1|B8|C|35
28LN|1|B8|G|36
28LN|1|B8|A|37
28LN|1|B8|U|38
28LN|1|B8|G|39
28LN|1|B8|A|40
28LN|1|B8|A|41
28LN|1|B8|G|42
*
28LN|1|B8|C|101
28LN|1|B8|G|102
28LN|1|B8|A|103
28LN|1|B8|A|104
28LN|1|B8|C|105
28LN|1|B8|G|106
*
28LN|1|B8|C|113
28LN|1|B8|G|114
*
28LN|1|B8|U|136
28LN|1|B8|A|137
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BN
- 60S ribosomal protein L15
- Chain BX
- 60S ribosomal protein L23a
- Chain Bh
- 60S ribosomal protein L35
- Chain Bj
- Large ribosomal subunit protein eL37
- Chain Bl
- 60S ribosomal protein L39
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