J5_28LN_006
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 28LN|1|B5|C|2288, 28LN|1|B5|U|2349
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28LN|1|B5|G|1334
28LN|1|B5|G|1335
28LN|1|B5|A|1336
28LN|1|B5|G|1337
28LN|1|B5|U|1338
28LN|1|B5|OMC|1339
*
28LN|1|B5|G|1515
28LN|1|B5|G|1516
28LN|1|B5|A|1517
28LN|1|B5|C|1518
*
28LN|1|B5|G|1657
28LN|1|B5|U|1658
28LN|1|B5|U|1659
28LN|1|B5|C|1660
*
28LN|1|B5|G|2287
28LN|1|B5|C|2288
28LN|1|B5|C|2289
*
28LN|1|B5|G|2344
28LN|1|B5|C|2345
28LN|1|B5|A|2346
28LN|1|B5|G|2347
28LN|1|B5|A|2348
28LN|1|B5|U|2349
28LN|1|B5|OMC|2350
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S ribosomal protein L4
- Chain BL
- 60S ribosomal protein L13
- Chain BN
- 60S ribosomal protein L15
- Chain Ba
- Large ribosomal subunit protein uL15
- Chain Be
- 60S ribosomal protein L32
- Chain Br
- Large ribosomal subunit protein eL28
Coloring options: