J5_28LN_007

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

28LN|1|B5|G|3619, 28LN|1|B5|G|3624

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_28LN_007 not in the Motif Atlas

Homologous match to J5_8GLP_003

Geometric discrepancy: 0.0911

The information below is about J5_8GLP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.4

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

12

Unit IDs

28LN|1|B5|G|2854
28LN|1|B5|C|2855
28LN|1|B5|A|2856
28LN|1|B5|A|2857
28LN|1|B5|G|2858
28LN|1|B5|C|2859
28LN|1|B5|OMC|2860
28LN|1|B5|G|2861
28LN|1|B5|G|2862
*
28LN|1|B5|U|2886
28LN|1|B5|G|2887
*
28LN|1|B5|U|3612
28LN|1|B5|G|3613
*
28LN|1|B5|C|3617
28LN|1|B5|G|3618
28LN|1|B5|G|3619
28LN|1|B5|A|3620
28LN|1|B5|C|3621
28LN|1|B5|C|3622
28LN|1|B5|A|3623
28LN|1|B5|G|3624
28LN|1|B5|G|3625
*
28LN|1|B5|C|3834
28LN|1|B5|A|3835
28LN|1|B5|C|3836

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3

Chain BR

60S ribosomal protein L19

Chain BV

60S ribosomal protein L23

Chain BW

60S ribosomal protein L24