J5_28LN_008
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 28LN|1|B5|A|3907, 28LN|1|B5|A|4393, 28LN|1|B5|U|4554, 28LN|1|B5|U|4555
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28LN|1|B5|A|3902
28LN|1|B5|G|3903
28LN|1|B5|A|3904
28LN|1|B5|A|3905
28LN|1|B5|G|3906
28LN|1|B5|A|3907
28LN|1|B5|C|3908
28LN|1|B5|C|3909
*
28LN|1|B5|OMG|4391
28LN|1|B5|G|4392
28LN|1|B5|A|4393
28LN|1|B5|U|4394
28LN|1|B5|A|4395
28LN|1|B5|A|4396
28LN|1|B5|C|4397
28LN|1|B5|U|4398
28LN|1|B5|G|4399
*
28LN|1|B5|C|4443
28LN|1|B5|U|4444
28LN|1|B5|U|4445
28LN|1|B5|5MC|4446
28LN|1|B5|G|4447
28LN|1|B5|A|4448
28LN|1|B5|U|4449
28LN|1|B5|G|4450
28LN|1|B5|U|4451
28LN|1|B5|C|4452
*
28LN|1|B5|G|4527
28LN|1|B5|G|4528
28LN|1|B5|UR3|4529
28LN|1|B5|U|4530
28LN|1|B5|PSU|4531
28LN|1|B5|A|4532
28LN|1|B5|G|4533
*
28LN|1|B5|PSU|4551
28LN|1|B5|A|4552
28LN|1|B5|G|4553
28LN|1|B5|U|4554
28LN|1|B5|U|4555
28LN|1|B5|U|4556
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B1
- Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form
- Chain B2
- Transfer RNA; tRNA
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BB
- Large ribosomal subunit protein uL3
- Chain BC
- 60S ribosomal protein L4
- Chain Bb
- Large ribosomal subunit protein eL29
Coloring options: