J5_28UJ_004

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

28UJ|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UJ|1|a|C|47
28UJ|1|a|G|48
28UJ|1|a|A|49
28UJ|1|a|U|50
28UJ|1|a|G|51
28UJ|1|a|A|52
28UJ|1|a|A|53
28UJ|1|a|G|54
*
28UJ|1|a|C|116
28UJ|1|a|G|117
28UJ|1|a|A|118
28UJ|1|a|A|119
28UJ|1|a|U|120
28UJ|1|a|G|121
*
28UJ|1|a|C|130
28UJ|1|a|A|131
*
28UJ|1|a|U|148
28UJ|1|a|A|149
28UJ|1|a|U|150
*
28UJ|1|a|A|176
28UJ|1|a|G|177
28UJ|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34