J5_28UL_009

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

28UL|1|a|U|2076, 28UL|1|a|G|2428, 28UL|1|a|G|2429, 28UL|1|a|A|2430, 28UL|1|a|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_28UL_009 not in the Motif Atlas

Homologous match to J5_7A0S_007

Geometric discrepancy: 0.0923

The information below is about J5_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

28UL|1|a|U|2074
28UL|1|a|U|2075
28UL|1|a|U|2076
28UL|1|a|A|2077
*
28UL|1|a|U|2243
28UL|1|a|U|2244
28UL|1|a|U|2245
28UL|1|a|G|2246
*
28UL|1|a|C|2258
28UL|1|a|U|2259
*
28UL|1|a|A|2281
28UL|1|a|G|2282
*
28UL|1|a|C|2427
28UL|1|a|G|2428
28UL|1|a|G|2429
28UL|1|a|A|2430
28UL|1|a|U|2431
28UL|1|a|A|2432
28UL|1|a|A|2433
28UL|1|a|A|2434
28UL|1|a|A|2435

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL33

Chain 2

Large ribosomal subunit protein bL35

Chain Z

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2

Chain k

Large ribosomal subunit protein uL15

Chain v

Large ribosomal subunit protein bL27

Chain w

Large ribosomal subunit protein bL28