J5_28UM_003
3D structure
- PDB id
- 28UM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 28UM|1|A|A|109, 28UM|1|A|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_28UM_003 not in the Motif Atlas
- Homologous match to J5_6CZR_021
- Geometric discrepancy: 0.1352
- The information below is about J5_6CZR_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.5
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
28UM|1|A|C|58
28UM|1|A|A|59
28UM|1|A|A|60
28UM|1|A|G|61
*
28UM|1|A|C|106
28UM|1|A|G|107
28UM|1|A|G|108
28UM|1|A|A|109
28UM|1|A|C|110
28UM|1|A|G|111
28UM|1|A|G|112
28UM|1|A|G|113
*
28UM|1|A|C|314
28UM|1|A|A|315
28UM|1|A|C|316
*
28UM|1|A|G|337
28UM|1|A|A|338
28UM|1|A|C|339
*
28UM|1|A|G|350
28UM|1|A|G|351
28UM|1|A|C|352
28UM|1|A|A|353
28UM|1|A|G|354
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
- Chain T
- Small ribosomal subunit protein bS20
- Chain j
- Large ribosomal subunit protein uL14
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: