J5_28UM_007
3D structure
- PDB id
- 28UM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 28UM|1|a|U|1758, 28UM|1|a|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_28UM_007 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.2629
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.3
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
28UM|1|a|G|1674
28UM|1|a|C|1675
28UM|1|a|A|1676
28UM|1|a|A|1677
28UM|1|a|A|1678
28UM|1|a|A|1679
28UM|1|a|U|1680
28UM|1|a|G|1681
28UM|1|a|G|1682
*
28UM|1|a|C|1706
28UM|1|a|G|1707
*
28UM|1|a|U|1751
28UM|1|a|C|1752
*
28UM|1|a|G|1756
28UM|1|a|A|1757
28UM|1|a|U|1758
28UM|1|a|A|1759
28UM|1|a|C|1760
28UM|1|a|C|1761
28UM|1|a|A|1762
28UM|1|a|G|1763
28UM|1|a|C|1764
*
28UM|1|a|G|1988
28UM|1|a|G|1989
28UM|1|a|C|1990
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain d
- Large ribosomal subunit protein uL3
- Chain j
- Large ribosomal subunit protein uL14
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: