J5_28UN_003

3D structure

PDB id

28UN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

28UN|1|A|A|109, 28UN|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_28UN_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.128

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

28UN|1|A|C|58
28UN|1|A|A|59
28UN|1|A|A|60
28UN|1|A|G|61
*
28UN|1|A|C|106
28UN|1|A|G|107
28UN|1|A|G|108
28UN|1|A|A|109
28UN|1|A|C|110
28UN|1|A|G|111
28UN|1|A|G|112
28UN|1|A|G|113
*
28UN|1|A|C|314
28UN|1|A|A|315
28UN|1|A|C|316
*
28UN|1|A|G|337
28UN|1|A|A|338
28UN|1|A|C|339
*
28UN|1|A|G|350
28UN|1|A|G|351
28UN|1|A|C|352
28UN|1|A|A|353
28UN|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20

Chain j

Large ribosomal subunit protein uL14