J5_2AAR_005

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGGAUG

Length

23 nucleotides

Bulged bases

2AAR|1|0|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2AAR_005 not in the Motif Atlas

Homologous match to J5_7A0S_004

Geometric discrepancy: 0.1534

The information below is about J5_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.6

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

2AAR|1|0|C|593
2AAR|1|0|G|594
2AAR|1|0|A|595
2AAR|1|0|C|596
2AAR|1|0|U|597
2AAR|1|0|U|598
*
2AAR|1|0|A|681
2AAR|1|0|G|682
2AAR|1|0|A|683
2AAR|1|0|C|684
*
2AAR|1|0|G|822
2AAR|1|0|U|823
2AAR|1|0|U|824
2AAR|1|0|C|825
*
2AAR|1|0|G|1209
2AAR|1|0|C|1210
*
2AAR|1|0|G|1263
2AAR|1|0|C|1264
2AAR|1|0|G|1265
2AAR|1|0|G|1266
2AAR|1|0|A|1267
2AAR|1|0|U|1268
2AAR|1|0|G|1269

Current chains

Chain 0

23S ribosomal RNA

Nearby chains