J5_2AAR_006

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUCG*UGGGUUCAG*CGGUCU

Length

40 nucleotides

Bulged bases

2AAR|1|0|A|2045, 2AAR|1|0|A|2427, 2AAR|1|0|U|2428, 2AAR|1|0|G|2484, 2AAR|1|0|G|2560, 2AAR|1|0|U|2588, 2AAR|1|0|C|2589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2AAR|1|0|A|2040
2AAR|1|0|A|2041
2AAR|1|0|A|2042
2AAR|1|0|A|2043
2AAR|1|0|G|2044
2AAR|1|0|A|2045
2AAR|1|0|C|2046
2AAR|1|0|C|2047
*
2AAR|1|0|G|2425
2AAR|1|0|G|2426
2AAR|1|0|A|2427
2AAR|1|0|U|2428
2AAR|1|0|A|2429
2AAR|1|0|A|2430
2AAR|1|0|C|2431
2AAR|1|0|A|2432
*
2AAR|1|0|U|2479
2AAR|1|0|C|2480
2AAR|1|0|G|2481
2AAR|1|0|A|2482
2AAR|1|0|U|2483
2AAR|1|0|G|2484
2AAR|1|0|U|2485
2AAR|1|0|C|2486
2AAR|1|0|G|2487
*
2AAR|1|0|U|2559
2AAR|1|0|G|2560
2AAR|1|0|G|2561
2AAR|1|0|G|2562
2AAR|1|0|U|2563
2AAR|1|0|U|2564
2AAR|1|0|C|2565
2AAR|1|0|A|2566
2AAR|1|0|G|2567
*
2AAR|1|0|C|2585
2AAR|1|0|G|2586
2AAR|1|0|G|2587
2AAR|1|0|U|2588
2AAR|1|0|C|2589
2AAR|1|0|U|2590

Current chains

Chain 0

23S ribosomal RNA

Nearby chains