J5_2E5L_002

3D structure

PDB id

2E5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

2E5L|1|A|A|109, 2E5L|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2E5L_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0851

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2E5L|1|A|C|58
2E5L|1|A|A|59
2E5L|1|A|A|60
2E5L|1|A|G|61
*
2E5L|1|A|C|106
2E5L|1|A|G|107
2E5L|1|A|G|108
2E5L|1|A|A|109
2E5L|1|A|C|110
2E5L|1|A|G|111
2E5L|1|A|G|112
2E5L|1|A|G|113
*
2E5L|1|A|C|314
2E5L|1|A|A|315
2E5L|1|A|G|316
*
2E5L|1|A|C|337
2E5L|1|A|A|338
2E5L|1|A|C|339
*
2E5L|1|A|G|350
2E5L|1|A|G|351
2E5L|1|A|C|352
2E5L|1|A|A|353
2E5L|1|A|G|354

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20