J5_2HHH_003

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

2HHH|1|A|A|103, 2HHH|1|A|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2HHH_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.077

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

2HHH|1|A|C|59
2HHH|1|A|A|60
2HHH|1|A|A|61
2HHH|1|A|G|62
*
2HHH|1|A|C|100
2HHH|1|A|G|101
2HHH|1|A|G|102
2HHH|1|A|A|103
2HHH|1|A|C|104
2HHH|1|A|G|105
2HHH|1|A|G|106
2HHH|1|A|G|107
*
2HHH|1|A|C|310
2HHH|1|A|A|311
2HHH|1|A|G|312
*
2HHH|1|A|C|333
2HHH|1|A|A|334
2HHH|1|A|C|335
*
2HHH|1|A|G|346
2HHH|1|A|G|347
2HHH|1|A|C|348
2HHH|1|A|A|349
2HHH|1|A|G|350

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20