J5_2J28_001

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

2J28|1|B|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2J28_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0792

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2J28|1|B|C|47
2J28|1|B|G|48
2J28|1|B|A|49
2J28|1|B|U|50
2J28|1|B|G|51
2J28|1|B|A|52
2J28|1|B|A|53
2J28|1|B|G|54
*
2J28|1|B|C|116
2J28|1|B|G|117
2J28|1|B|A|118
2J28|1|B|A|119
2J28|1|B|U|120
2J28|1|B|G|121
*
2J28|1|B|C|130
2J28|1|B|A|131
*
2J28|1|B|U|148
2J28|1|B|A|149
2J28|1|B|U|150
*
2J28|1|B|A|176
2J28|1|B|G|177
2J28|1|B|G|178

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34