J5_2O44_002

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

2O44|1|A|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2O44_002 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.1412

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_75459.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

2O44|1|A|C|46
2O44|1|A|G|47
2O44|1|A|A|48
2O44|1|A|U|49
2O44|1|A|G|50
2O44|1|A|A|51
2O44|1|A|A|52
2O44|1|A|G|53
*
2O44|1|A|C|114
2O44|1|A|G|115
2O44|1|A|A|116
2O44|1|A|A|117
2O44|1|A|U|118
2O44|1|A|G|119
*
2O44|1|A|C|128
2O44|1|A|A|129
*
2O44|1|A|U|142
2O44|1|A|A|143
*
2O44|1|A|U|154
2O44|1|A|G|155

Current chains

Chain A

23S rRNA

Nearby chains