J5_2O45_004

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

2O45|1|A|U|2059, 2O45|1|A|G|2407, 2O45|1|A|G|2408, 2O45|1|A|A|2409, 2O45|1|A|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2O45_004 not in the Motif Atlas

Homologous match to J5_7A0S_007

Geometric discrepancy: 0.1555

The information below is about J5_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

2O45|1|A|U|2057
2O45|1|A|U|2058
2O45|1|A|U|2059
2O45|1|A|A|2060
*
2O45|1|A|U|2222
2O45|1|A|U|2223
2O45|1|A|U|2224
2O45|1|A|G|2225
*
2O45|1|A|C|2237
2O45|1|A|G|2238
*
2O45|1|A|C|2260
2O45|1|A|G|2261
*
2O45|1|A|C|2406
2O45|1|A|G|2407
2O45|1|A|G|2408
2O45|1|A|A|2409
2O45|1|A|U|2410
2O45|1|A|A|2411
2O45|1|A|A|2412
2O45|1|A|A|2413
2O45|1|A|A|2414

Current chains

Chain A

23S rRNA

Nearby chains