J5_2OGO_001

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAUCC*GGAUG

Length

26 nucleotides

Bulged bases

2OGO|1|0|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|C|46
2OGO|1|0|G|47
2OGO|1|0|A|48
2OGO|1|0|U|49
2OGO|1|0|G|50
2OGO|1|0|A|51
2OGO|1|0|A|52
2OGO|1|0|G|53
*
2OGO|1|0|C|114
2OGO|1|0|G|115
2OGO|1|0|A|116
2OGO|1|0|A|117
2OGO|1|0|U|118
2OGO|1|0|G|119
*
2OGO|1|0|C|128
2OGO|1|0|A|129
*
2OGO|1|0|U|142
2OGO|1|0|A|143
2OGO|1|0|U|144
2OGO|1|0|C|145
2OGO|1|0|C|146
*
2OGO|1|0|G|151
2OGO|1|0|G|152
2OGO|1|0|A|153
2OGO|1|0|U|154
2OGO|1|0|G|155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains