J5_2OGO_003

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GGGUUC*GGAAAGUCGGGAC*GACAG*CACC*GCCCGUACC

Length

37 nucleotides

Bulged bases

2OGO|1|0|G|1324, 2OGO|1|0|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|G|1322
2OGO|1|0|G|1323
2OGO|1|0|G|1324
2OGO|1|0|U|1325
2OGO|1|0|U|1326
2OGO|1|0|C|1327
*
2OGO|1|0|G|1351
2OGO|1|0|G|1352
2OGO|1|0|A|1353
2OGO|1|0|A|1354
2OGO|1|0|A|1355
2OGO|1|0|G|1356
2OGO|1|0|U|1357
2OGO|1|0|C|1358
2OGO|1|0|G|1359
2OGO|1|0|G|1360
2OGO|1|0|G|1361
2OGO|1|0|A|1362
2OGO|1|0|C|1363
*
2OGO|1|0|G|1394
2OGO|1|0|A|1395
2OGO|1|0|C|1396
2OGO|1|0|A|1397
2OGO|1|0|G|1398
*
2OGO|1|0|C|1415
2OGO|1|0|A|1416
2OGO|1|0|C|1417
2OGO|1|0|C|1418
*
2OGO|1|0|G|1613
2OGO|1|0|C|1614
2OGO|1|0|C|1615
2OGO|1|0|C|1616
2OGO|1|0|G|1617
2OGO|1|0|U|1618
2OGO|1|0|A|1619
2OGO|1|0|C|1620
2OGO|1|0|C|1621

Current chains

Chain 0

23S ribosomal RNA

Nearby chains