J5_2OGO_008

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGGAUG

Length

23 nucleotides

Bulged bases

2OGO|1|0|U|824, 2OGO|1|0|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2OGO_008 not in the Motif Atlas

Homologous match to J5_7A0S_004

Geometric discrepancy: 0.1411

The information below is about J5_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.6

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

2OGO|1|0|C|593
2OGO|1|0|G|594
2OGO|1|0|A|595
2OGO|1|0|C|596
2OGO|1|0|U|597
2OGO|1|0|U|598
*
2OGO|1|0|A|681
2OGO|1|0|G|682
2OGO|1|0|A|683
2OGO|1|0|C|684
*
2OGO|1|0|G|822
2OGO|1|0|U|823
2OGO|1|0|U|824
2OGO|1|0|C|825
*
2OGO|1|0|G|1209
2OGO|1|0|C|1210
*
2OGO|1|0|G|1263
2OGO|1|0|C|1264
2OGO|1|0|G|1265
2OGO|1|0|G|1266
2OGO|1|0|A|1267
2OGO|1|0|U|1268
2OGO|1|0|G|1269

Current chains

Chain 0

23S ribosomal RNA

Nearby chains