J5_2OTJ_006
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAGUUAG*UG*UC*GUGACUCGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 2OTJ|1|0|G|1814, 2OTJ|1|0|G|1819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_2OTJ_006 not in the Motif Atlas
- Homologous match to J5_4V9F_006
- Geometric discrepancy: 0.0331
- The information below is about J5_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
2OTJ|1|0|G|1752
2OTJ|1|0|C|1753
2OTJ|1|0|A|1754
2OTJ|1|0|A|1755
2OTJ|1|0|G|1756
2OTJ|1|0|U|1757
2OTJ|1|0|U|1758
2OTJ|1|0|A|1759
2OTJ|1|0|G|1760
*
2OTJ|1|0|U|1784
2OTJ|1|0|G|1785
*
2OTJ|1|0|U|1807
2OTJ|1|0|C|1808
*
2OTJ|1|0|G|1812
2OTJ|1|0|U|1813
2OTJ|1|0|G|1814
2OTJ|1|0|A|1815
2OTJ|1|0|C|1816
2OTJ|1|0|U|1817
2OTJ|1|0|C|1818
2OTJ|1|0|G|1819
2OTJ|1|0|G|1820
*
2OTJ|1|0|C|2029
2OTJ|1|0|A|2030
2OTJ|1|0|C|2031
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain K
- 50S ribosomal protein L14P
- Chain P
- 50S ribosomal protein L19e
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