J5_2OTL_006

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

2OTL|1|0|G|1814, 2OTL|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2OTL_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.036

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

2OTL|1|0|G|1752
2OTL|1|0|C|1753
2OTL|1|0|A|1754
2OTL|1|0|A|1755
2OTL|1|0|G|1756
2OTL|1|0|U|1757
2OTL|1|0|U|1758
2OTL|1|0|A|1759
2OTL|1|0|G|1760
*
2OTL|1|0|U|1784
2OTL|1|0|G|1785
*
2OTL|1|0|U|1807
2OTL|1|0|C|1808
*
2OTL|1|0|G|1812
2OTL|1|0|U|1813
2OTL|1|0|G|1814
2OTL|1|0|A|1815
2OTL|1|0|C|1816
2OTL|1|0|U|1817
2OTL|1|0|C|1818
2OTL|1|0|G|1819
2OTL|1|0|G|1820
*
2OTL|1|0|C|2029
2OTL|1|0|A|2030
2OTL|1|0|C|2031

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e