J5_2QA4_010

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

2QA4|1|0|G|1814, 2QA4|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2QA4_010 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0643

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

2QA4|1|0|G|1752
2QA4|1|0|C|1753
2QA4|1|0|A|1754
2QA4|1|0|A|1755
2QA4|1|0|G|1756
2QA4|1|0|U|1757
2QA4|1|0|U|1758
2QA4|1|0|A|1759
2QA4|1|0|G|1760
*
2QA4|1|0|U|1784
2QA4|1|0|G|1785
*
2QA4|1|0|U|1807
2QA4|1|0|C|1808
*
2QA4|1|0|G|1812
2QA4|1|0|U|1813
2QA4|1|0|G|1814
2QA4|1|0|A|1815
2QA4|1|0|C|1816
2QA4|1|0|U|1817
2QA4|1|0|C|1818
2QA4|1|0|G|1819
2QA4|1|0|G|1820
*
2QA4|1|0|C|2029
2QA4|1|0|A|2030
2QA4|1|0|C|2031

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e