J5_2QEX_001
3D structure
- PDB id
- 2QEX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAUGAAG*CGAAUG*CU*ACAA*UGA
- Length
- 23 nucleotides
- Bulged bases
- 2QEX|1|0|U|46, 2QEX|1|0|C|130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_2QEX_001 not in the Motif Atlas
- Homologous match to J5_4V9F_001
- Geometric discrepancy: 0.049
- The information below is about J5_4V9F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99180.1
- Basepair signature
- cWW-F-F-cHW-cWW-tSH-tHH-F-tHS-F-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
2QEX|1|0|U|43
2QEX|1|0|G|44
2QEX|1|0|A|45
2QEX|1|0|U|46
2QEX|1|0|G|47
2QEX|1|0|A|48
2QEX|1|0|A|49
2QEX|1|0|G|50
*
2QEX|1|0|C|111
2QEX|1|0|G|112
2QEX|1|0|A|113
2QEX|1|0|A|114
2QEX|1|0|U|115
2QEX|1|0|G|116
*
2QEX|1|0|C|124
2QEX|1|0|U|125
*
2QEX|1|0|A|129
2QEX|1|0|C|130
2QEX|1|0|A|131
2QEX|1|0|A|132
*
2QEX|1|0|U|146
2QEX|1|0|G|147
2QEX|1|0|A|148
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain M
- 50S ribosomal protein L15e
- Chain S
- 50S ribosomal protein L23P
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