J5_2UUC_002

3D structure

PDB id

2UUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

2UUC|1|A|A|109, 2UUC|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2UUC_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0518

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

2UUC|1|A|C|58
2UUC|1|A|A|59
2UUC|1|A|A|60
2UUC|1|A|G|61
*
2UUC|1|A|C|106
2UUC|1|A|G|107
2UUC|1|A|G|108
2UUC|1|A|A|109
2UUC|1|A|C|110
2UUC|1|A|G|111
2UUC|1|A|G|112
2UUC|1|A|G|113
*
2UUC|1|A|C|314
2UUC|1|A|A|315
2UUC|1|A|G|316
*
2UUC|1|A|C|337
2UUC|1|A|A|338
2UUC|1|A|C|339
*
2UUC|1|A|G|350
2UUC|1|A|G|351
2UUC|1|A|C|352
2UUC|1|A|A|353
2UUC|1|A|G|354

Current chains

Chain A

16S RRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20