J5_2UXC_002

3D structure

PDB id

2UXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

2UXC|1|A|A|109, 2UXC|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2UXC_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0481

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2UXC|1|A|C|58
2UXC|1|A|A|59
2UXC|1|A|A|60
2UXC|1|A|G|61
*
2UXC|1|A|C|106
2UXC|1|A|G|107
2UXC|1|A|G|108
2UXC|1|A|A|109
2UXC|1|A|C|110
2UXC|1|A|G|111
2UXC|1|A|G|112
2UXC|1|A|G|113
*
2UXC|1|A|C|314
2UXC|1|A|A|315
2UXC|1|A|G|316
*
2UXC|1|A|C|337
2UXC|1|A|A|338
2UXC|1|A|C|339
*
2UXC|1|A|G|350
2UXC|1|A|G|351
2UXC|1|A|C|352
2UXC|1|A|A|353
2UXC|1|A|G|354

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN S16

Chain T

RIBOSOMAL PROTEIN S20