J5_2UXD_001
3D structure
- PDB id
- 2UXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 2UXD|1|A|A|109, 2UXD|1|A|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_2UXD_001 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.058
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
2UXD|1|A|C|58
2UXD|1|A|A|59
2UXD|1|A|A|60
2UXD|1|A|G|61
*
2UXD|1|A|C|106
2UXD|1|A|G|107
2UXD|1|A|G|108
2UXD|1|A|A|109
2UXD|1|A|C|110
2UXD|1|A|G|111
2UXD|1|A|G|112
2UXD|1|A|G|113
*
2UXD|1|A|C|314
2UXD|1|A|A|315
2UXD|1|A|G|316
*
2UXD|1|A|C|337
2UXD|1|A|A|338
2UXD|1|A|C|339
*
2UXD|1|A|G|350
2UXD|1|A|G|351
2UXD|1|A|C|352
2UXD|1|A|A|353
2UXD|1|A|G|354
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain P
- RIBOSOMAL PROTEIN S16
- Chain T
- RIBOSOMAL PROTEIN S20
Coloring options: