J5_2VQE_002
3D structure
- PDB id
- 2VQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 2VQE|1|A|A|109, 2VQE|1|A|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_2VQE_002 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0492
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
2VQE|1|A|C|58
2VQE|1|A|A|59
2VQE|1|A|A|60
2VQE|1|A|G|61
*
2VQE|1|A|C|106
2VQE|1|A|G|107
2VQE|1|A|G|108
2VQE|1|A|A|109
2VQE|1|A|C|110
2VQE|1|A|G|111
2VQE|1|A|G|112
2VQE|1|A|G|113
*
2VQE|1|A|C|314
2VQE|1|A|A|315
2VQE|1|A|G|316
*
2VQE|1|A|C|337
2VQE|1|A|A|338
2VQE|1|A|C|339
*
2VQE|1|A|G|350
2VQE|1|A|G|351
2VQE|1|A|C|352
2VQE|1|A|A|353
2VQE|1|A|G|354
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain P
- 30S RIBOSOMAL PROTEIN S16
- Chain T
- 30S RIBOSOMAL PROTEIN S20
Coloring options: