J5_2YKR_002
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CAAGUC*GGCGGACGGG*CAC*GAC*GGCAG
- Length
- 27 nucleotides
- Bulged bases
- 2YKR|1|A|G|108, 2YKR|1|A|A|109, 2YKR|1|A|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_2YKR_002 not in the Motif Atlas
- Homologous match to J5_6CZR_008
- Geometric discrepancy: 0.5777
- The information below is about J5_6CZR_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
2YKR|1|A|C|58
2YKR|1|A|A|59
2YKR|1|A|A|60
2YKR|1|A|G|61
2YKR|1|A|U|62
2YKR|1|A|C|63
*
2YKR|1|A|G|104
2YKR|1|A|G|105
2YKR|1|A|C|106
2YKR|1|A|G|107
2YKR|1|A|G|108
2YKR|1|A|A|109
2YKR|1|A|C|110
2YKR|1|A|G|111
2YKR|1|A|G|112
2YKR|1|A|G|113
*
2YKR|1|A|C|314
2YKR|1|A|A|315
2YKR|1|A|C|316
*
2YKR|1|A|G|337
2YKR|1|A|A|338
2YKR|1|A|C|339
*
2YKR|1|A|G|350
2YKR|1|A|G|351
2YKR|1|A|C|352
2YKR|1|A|A|353
2YKR|1|A|G|354
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain P
- 30S RIBOSOMAL PROTEIN S16
- Chain T
- 30S RIBOSOMAL PROTEIN S20
Coloring options: