J5_2ZJP_007

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

2ZJP|1|X|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2ZJP_007 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.1097

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_75459.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

2ZJP|1|X|C|46
2ZJP|1|X|G|47
2ZJP|1|X|A|48
2ZJP|1|X|U|49
2ZJP|1|X|G|50
2ZJP|1|X|A|51
2ZJP|1|X|A|52
2ZJP|1|X|G|53
*
2ZJP|1|X|C|114
2ZJP|1|X|G|115
2ZJP|1|X|A|116
2ZJP|1|X|A|117
2ZJP|1|X|U|118
2ZJP|1|X|G|119
*
2ZJP|1|X|C|128
2ZJP|1|X|A|129
*
2ZJP|1|X|U|142
2ZJP|1|X|A|143
*
2ZJP|1|X|U|154
2ZJP|1|X|G|155

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain Q

50S RIBOSOMAL PROTEIN L23