J5_2ZJR_001

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

2ZJR|1|X|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2ZJR_001 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.1049

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_68783.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

2ZJR|1|X|C|46
2ZJR|1|X|G|47
2ZJR|1|X|A|48
2ZJR|1|X|U|49
2ZJR|1|X|G|50
2ZJR|1|X|A|51
2ZJR|1|X|A|52
2ZJR|1|X|G|53
*
2ZJR|1|X|C|114
2ZJR|1|X|G|115
2ZJR|1|X|A|116
2ZJR|1|X|A|117
2ZJR|1|X|U|118
2ZJR|1|X|G|119
*
2ZJR|1|X|C|128
2ZJR|1|X|A|129
*
2ZJR|1|X|U|142
2ZJR|1|X|A|143
*
2ZJR|1|X|U|154
2ZJR|1|X|G|155

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23