J5_2ZJR_004
3D structure
- PDB id
- 2ZJR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.91 Å
Loop
- Sequence
- GCAAUCUCA*UC*GC*GUGAAUAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 2ZJR|1|X|G|1749, 2ZJR|1|X|G|1754
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_2ZJR_004 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.1752
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
2ZJR|1|X|G|1691
2ZJR|1|X|C|1692
2ZJR|1|X|A|1693
2ZJR|1|X|A|1694
2ZJR|1|X|U|1695
2ZJR|1|X|C|1696
2ZJR|1|X|U|1697
2ZJR|1|X|C|1698
2ZJR|1|X|A|1699
*
2ZJR|1|X|U|1723
2ZJR|1|X|C|1724
*
2ZJR|1|X|G|1742
2ZJR|1|X|C|1743
*
2ZJR|1|X|G|1747
2ZJR|1|X|U|1748
2ZJR|1|X|G|1749
2ZJR|1|X|A|1750
2ZJR|1|X|A|1751
2ZJR|1|X|U|1752
2ZJR|1|X|A|1753
2ZJR|1|X|G|1754
2ZJR|1|X|G|1755
*
2ZJR|1|X|C|1971
2ZJR|1|X|G|1972
2ZJR|1|X|C|1973
Current chains
- Chain X
- ribosomal 23S RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L14
- Chain M
- 50S ribosomal protein L19
Coloring options: