J5_2ZJR_004

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GCAAUCUCA*UC*GC*GUGAAUAGG*CGC

Length

25 nucleotides

Bulged bases

2ZJR|1|X|G|1749, 2ZJR|1|X|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2ZJR_004 not in the Motif Atlas

Homologous match to J5_7A0S_005

Geometric discrepancy: 0.1752

The information below is about J5_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

2ZJR|1|X|G|1691
2ZJR|1|X|C|1692
2ZJR|1|X|A|1693
2ZJR|1|X|A|1694
2ZJR|1|X|U|1695
2ZJR|1|X|C|1696
2ZJR|1|X|U|1697
2ZJR|1|X|C|1698
2ZJR|1|X|A|1699
*
2ZJR|1|X|U|1723
2ZJR|1|X|C|1724
*
2ZJR|1|X|G|1742
2ZJR|1|X|C|1743
*
2ZJR|1|X|G|1747
2ZJR|1|X|U|1748
2ZJR|1|X|G|1749
2ZJR|1|X|A|1750
2ZJR|1|X|A|1751
2ZJR|1|X|U|1752
2ZJR|1|X|A|1753
2ZJR|1|X|G|1754
2ZJR|1|X|G|1755
*
2ZJR|1|X|C|1971
2ZJR|1|X|G|1972
2ZJR|1|X|C|1973

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19