J5_2ZJR_006
3D structure
- PDB id
- 2ZJR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.91 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 2ZJR|1|X|U|2059, 2ZJR|1|X|G|2407, 2ZJR|1|X|G|2408, 2ZJR|1|X|A|2409, 2ZJR|1|X|U|2410
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_2ZJR_006 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.0815
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
2ZJR|1|X|U|2057
2ZJR|1|X|U|2058
2ZJR|1|X|U|2059
2ZJR|1|X|A|2060
*
2ZJR|1|X|U|2222
2ZJR|1|X|U|2223
2ZJR|1|X|U|2224
2ZJR|1|X|G|2225
*
2ZJR|1|X|C|2237
2ZJR|1|X|G|2238
*
2ZJR|1|X|C|2260
2ZJR|1|X|G|2261
*
2ZJR|1|X|C|2406
2ZJR|1|X|G|2407
2ZJR|1|X|G|2408
2ZJR|1|X|A|2409
2ZJR|1|X|U|2410
2ZJR|1|X|A|2411
2ZJR|1|X|A|2412
2ZJR|1|X|A|2413
2ZJR|1|X|A|2414
Current chains
- Chain X
- ribosomal 23S RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain A
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain U
- 50S ribosomal protein L28
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