J5_3ADC_002

3D structure

PDB id

3ADC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 2)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAC*GG*CG*CG*CG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3ADC_002 not in the Motif Atlas

Homologous match to J5_3ADD_001

Geometric discrepancy: 0.2749

The information below is about J5_3ADD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_45920.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3ADC|1|D|C|7
3ADC|1|D|C|8
3ADC|1|D|A|9
3ADC|1|D|C|10
*
3ADC|1|D|G|25
3ADC|1|D|G|26
*
3ADC|1|D|C|44
3ADC|1|D|G|45
*
3ADC|1|D|C|48
3ADC|1|D|G|50
*
3ADC|1|D|C|64
3ADC|1|D|G|66

Current chains

Chain D

selenocysteine tRNA

Nearby chains