Motif J5_90945.1 Version J5_90945.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | break | 7 | 8 | break | 9 | 10 | break | 11 | 12 | 1-12 | 4-5 | 6-7 | 8-9 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_3AM1_001 | 3AM1 | 0.0000 | 0 | B | ASL-truncated tRNA | G | 9 | U | 10 | A | 11 | C | 12 | * | G | 29 | G | 30 | * | C | 39 | G | 40 | * | C | 55 | G | 56 | * | C | 70 | C | 71 | cWW | cWW | cWW | cWW | cWW |
| 2 | J5_3ADD_001 | 3ADD | 0.4667 | 0 | C | Selenocysteine transfer RNA | C | 7 | C | 8 | A | 9 | C | 10 | * | G | 25 | G | 26 | * | C | 44 | G | 45 | * | C | 48 | G | 50 | * | C | 64 | G | 66 | cWW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAC*GG*CG*CG*CC | 1 |
| CCAC*GG*CG*CG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA**** | 1 |
| CA**** | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-F-cWW-cWW-cWW
- Heat map statistics
- Min 0.47 | Avg 0.23 | Max 0.47
Coloring options: