J5_3AM1_001

3D structure

PDB id

3AM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of O-Phosphoseryl-tRNA kinase complexed with anticodon-stem/loop truncated tRNA(Sec)

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUAC*GG*CG*CG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_30666.1

Basepair signature

cWW-F-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3AM1|1|B|G|9
3AM1|1|B|U|10
3AM1|1|B|A|11
3AM1|1|B|C|12
*
3AM1|1|B|G|29
3AM1|1|B|G|30
*
3AM1|1|B|C|39
3AM1|1|B|G|40
*
3AM1|1|B|C|55
3AM1|1|B|G|56
*
3AM1|1|B|C|70
3AM1|1|B|C|71

Current chains

Chain B

ASL-truncated tRNA

Nearby chains