J5_3BBX_001

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

3BBX|1|B|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3BBX_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0999

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3BBX|1|B|C|47
3BBX|1|B|G|48
3BBX|1|B|A|49
3BBX|1|B|U|50
3BBX|1|B|G|51
3BBX|1|B|A|52
3BBX|1|B|A|53
3BBX|1|B|G|54
*
3BBX|1|B|C|116
3BBX|1|B|G|117
3BBX|1|B|A|118
3BBX|1|B|A|119
3BBX|1|B|U|120
3BBX|1|B|G|121
*
3BBX|1|B|C|130
3BBX|1|B|A|131
*
3BBX|1|B|U|148
3BBX|1|B|A|149
3BBX|1|B|U|150
*
3BBX|1|B|A|176
3BBX|1|B|G|177
3BBX|1|B|G|178

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23