J5_3CC2_006

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

3CC2|1|0|G|1814, 3CC2|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3CC2_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0204

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3CC2|1|0|G|1752
3CC2|1|0|C|1753
3CC2|1|0|A|1754
3CC2|1|0|A|1755
3CC2|1|0|G|1756
3CC2|1|0|U|1757
3CC2|1|0|U|1758
3CC2|1|0|A|1759
3CC2|1|0|G|1760
*
3CC2|1|0|U|1784
3CC2|1|0|G|1785
*
3CC2|1|0|U|1807
3CC2|1|0|C|1808
*
3CC2|1|0|G|1812
3CC2|1|0|U|1813
3CC2|1|0|G|1814
3CC2|1|0|A|1815
3CC2|1|0|C|1816
3CC2|1|0|U|1817
3CC2|1|0|C|1818
3CC2|1|0|G|1819
3CC2|1|0|G|1820
*
3CC2|1|0|C|2029
3CC2|1|0|A|2030
3CC2|1|0|C|2031

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e