J5_3CCE_006

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

3CCE|1|0|G|1814, 3CCE|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3CCE_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0369

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3CCE|1|0|G|1752
3CCE|1|0|C|1753
3CCE|1|0|A|1754
3CCE|1|0|A|1755
3CCE|1|0|G|1756
3CCE|1|0|U|1757
3CCE|1|0|U|1758
3CCE|1|0|A|1759
3CCE|1|0|G|1760
*
3CCE|1|0|U|1784
3CCE|1|0|G|1785
*
3CCE|1|0|U|1807
3CCE|1|0|C|1808
*
3CCE|1|0|G|1812
3CCE|1|0|U|1813
3CCE|1|0|G|1814
3CCE|1|0|A|1815
3CCE|1|0|C|1816
3CCE|1|0|U|1817
3CCE|1|0|C|1818
3CCE|1|0|G|1819
3CCE|1|0|G|1820
*
3CCE|1|0|C|2029
3CCE|1|0|A|2030
3CCE|1|0|C|2031

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e